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- 1From: BMC Genomics. (Vol. 19, Issue 1) Peer-ReviewedBackground Recent large-scale whole genome sequencing efforts in birds have elucidated broad patterns of avian phylogeny and genome evolution. However, despite the great interest in economically important phasianids...
- 2From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground We describe the virulence factors of a methicillin-sensitive Staphylococcus aureus sequence type (ST) 45 strain, MCRF184, (spa type t917), that caused severe necrotizing fasciitis in a 72-year-old diabetic...
- 3From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground The orange pigmentation of the agar cultures of many Fusarium species is due to the production of carotenoids, terpenoid pigments whose synthesis is stimulated by light. The genes of the carotenoid pathway...
- 4From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground Toxoplasma gondii is an obligate intracellular parasite that infects humans and other warm-blooded animals. Previous quantitative proteomic analyses of infected host cells revealed that the expression of...
- 5From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground DNA methylation is involved in the regulation of gene expression. Although bisulfite-sequencing based methods profile DNA methylation at a single CpG resolution, methylation levels are usually averaged over...
- 6From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground Paulownia withes'-broom (PaWB) disease caused by phytoplasma is a serious infectious disease for Paulownia. However, the underlying molecular pathogenesis is not fully understood. Recent studies have...
- 7From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground Pasteurella multocida (P. multocida) is a widespread opportunistic pathogen that infects human and various animals. Genomic Islands (GIs) are one of the most important mobile components that quickly help...
- 8From: BMC Genomics. (Vol. 20, Issue Suppl 2) Peer-ReviewedBackground Single Nucleotide Polymorphism (SNP) in the genome has become crucial information for clinical use. For example, the targeted cancer therapy is primarily based on the information which clinically important...
- 9From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground Positively correlated with carcass weight and animal growth, the ribeye area (REA) and the backfat thickness (BFT) are economic important carcass traits, which impact directly on producer's payment. The...
- 10From: BMC Genomics. (Vol. 20, Issue Suppl 1) Peer-ReviewedBackground Genome-wide association studies (GWAS) have been successful in identifying disease-associated genetic variants. Recently, an increasing number of GWAS summary statistics have been made available to the...
- 11From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground The effect of mutations conferring antibiotic resistance can depend on the genetic background. To determine if a previously de novo acquired antibiotic resistance influences the adaptation to a second...
- 12From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground 3' RNA sequencing provides an alternative to whole transcript analysis. However, we do not know a priori the relative advantage of each method. Thus, a comprehensive comparison between the whole transcript...
- 13From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedFollowing the publication of this article [1], the authors informed us of the following typographical errors in the Results section (the changes are marked in bold). Author(s): Thomas J. F. Pranzatelli1 , Drew G....
- 14From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground Agropyron cristatum (L.) Gaertn. (2n = 4x = 28; genomes PPPP) is a wild relative of common wheat (Triticum aestivum L.) and provides many desirable genetic resources for wheat improvement. However, there is...
- 15From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground The time required to analyse RNA-seq data varies considerably, due to discrete steps for computational assembly, quantification of gene expression and splicing analysis. Recent fast non-alignment tools such...
- 16From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground As a newly characterized type of noncoding RNA, circular RNA (circRNA) has been shown to have functions in diverse biological processes of animals. It has been reported that several noncoding RNAs may...
- 17From: BMC Genomics. (Vol. 21, Issue 1) Peer-ReviewedBackground To evaluate binary classifications and their confusion matrices, scientific researchers can employ several statistical rates, accordingly to the goal of the experiment they are investigating. Despite being a...
- 18From: BMC Genomics. (Vol. 21, Issue 1) Peer-ReviewedBackground Domain of unknown function (DUF) proteins represent a number of gene families that encode functionally uncharacterized proteins in eukaryotes. The DUF4228 gene family is one of these families in plants that...
- 19From: BMC Genomics. (Vol. 21, Issue 1) Peer-ReviewedBackground DNA sequencing is at the core of many molecular biology laboratories. Despite its long history, there is a lack of user-friendly Sanger sequencing data analysis tools that can be run interactively as a web...
- 20From: BMC Genomics. (Vol. 20, Issue 1) Peer-ReviewedBackground Bacteria within the genus Streptomyces remain a major source of new natural product discovery and as soil inoculants in agriculture where they promote plant growth and protect from disease. Recently,...