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- 1From: BMC Bioinformatics. (Vol. 11) Peer-ReviewedBackground DNA copy number aberration (CNA) is very important in the pathogenesis of tumors and other diseases. For example, CNAs may result in suppression of anti-oncogenes and activation of oncogenes, which would...
- 2From: BMC Bioinformatics. (Vol. 11) Peer-ReviewedAuthors: Sayak Ganguli (corresponding author) [1]; Manjita Mazumder [1]; Protip Basu [1]; Paushali Roy [1]; Sayani Mitra [1]; Abhijit Datta [1] Retraction This article has been regretfully retracted due to...
- 3From: BMC Bioinformatics. (Vol. 11) Peer-Reviewed
- 4From: BMC Bioinformatics. (Vol. 11) Peer-Reviewed
- 5From: BMC Bioinformatics. (Vol. 11) Peer-Reviewed
- 6From: BMC Bioinformatics. (Vol. 11) Peer-Reviewed
- 7From: BMC Bioinformatics. (Vol. 11) Peer-Reviewed
- 8From: BMC Bioinformatics. (Vol. 11) Peer-Reviewed
- 9From: BMC Bioinformatics. (Vol. 11) Peer-Reviewed
- 10From: BMC Bioinformatics. (Vol. 11) Peer-Reviewed
- 11From: BMC Bioinformatics. (Vol. 11) Peer-Reviewed
- 12From: BMC Bioinformatics. (Vol. 11) Peer-Reviewed
- 13From: BMC Bioinformatics. (Vol. 11) Peer-ReviewedBackground Partitioning of a protein into structural components, known as domains, is an important initial step in protein classification and for functional and evolutionary studies. While the systematic assignments...
- 14From: BMC Bioinformatics. (Vol. 11) Peer-ReviewedBackground [beta]-turns are secondary structure elements usually classified as coil. Their prediction is important, because of their role in protein folding and their frequent occurrence in protein chains. Results...
- 15From: BMC Bioinformatics. (Vol. 11) Peer-ReviewedBackground Statistical methods to tentatively identify differentially expressed genes in microarray studies typically assume larger sample sizes than are practical or even possible in some settings. Results The...
- 16From: BMC Bioinformatics. (Vol. 11) Peer-ReviewedBackground Network co-regulated modules are believed to have the functionality of packaging multiple biological entities, and can thus be assumed to coordinate many biological functions in their network neighbouring...
- 17From: BMC Bioinformatics. (Vol. 11) Peer-ReviewedBackground Current imaging methods such as Magnetic Resonance Imaging (MRI), Confocal microscopy, Electron Microscopy (EM) or Selective Plane Illumination Microscopy (SPIM) yield three-dimensional (3D) data sets in...
- 18From: BMC Bioinformatics. (Vol. 11) Peer-ReviewedBackground High-density tiling arrays and new sequencing technologies are generating rapidly increasing volumes of transcriptome and protein-DNA interaction data. Visualization and exploration of this data is...
- 19From: BMC Bioinformatics. (Vol. 11) Peer-ReviewedBackground Prediction of catalytic residues is a major step in characterizing the function of enzymes. In its simpler formulation, the problem can be cast into a binary classification task at the residue level, by...
- 20From: BMC Bioinformatics. (Vol. 11) Peer-ReviewedBackground Modelling the ligand binding site of a protein is an important component of understanding protein-ligand interactions and is being actively studied. Even if the side chains are restricted to rotamers, a...